CZI Single Cell Data Available

Data Access Options

By Anna K. Casasent 1 July, 2022

Chan Zuckerberg Initiative - cell by gene


Access to this data will be aviable via the CZI cell by gene portal (CellxGene).

The CellxGene is a suite of tools that help scientists to find, download, explore, analyze, annotate, and publish single cell datasets. It includes several powerful tools with various features to help you to engage with single cell data.  

The single cell data and visium data are currenty available at: 

The nuclei data is currently being curated at CZI for their portal format and will be released at time of publication.

Gene Expression Omnibus - GEO Access


The data is being uploaded and updated in GEO and will be made should be available soon.