Session Info
## R version 4.2.0 (2022-04-22)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils
## [6] datasets methods base
##
## other attached packages:
## [1] BiocParallel_1.30.2
## [2] copykit_0.1.2
## [3] DNAcopy_1.70.0
## [4] Rsubread_2.10.0
## [5] SingleCellExperiment_1.18.0
## [6] SummarizedExperiment_1.26.1
## [7] Biobase_2.56.0
## [8] GenomicRanges_1.48.0
## [9] GenomeInfoDb_1.32.2
## [10] IRanges_2.30.0
## [11] S4Vectors_0.34.0
## [12] BiocGenerics_0.42.0
## [13] MatrixGenerics_1.8.0
## [14] matrixStats_0.62.0
##
## loaded via a namespace (and not attached):
## [1] rappdirs_0.3.3 rtracklayer_1.56.0
## [3] prabclus_2.3-2 coda_0.19-4
## [5] tidyr_1.2.0 ggplot2_3.3.6
## [7] clusterGeneration_1.3.7 bit64_4.0.5
## [9] knitr_1.39 irlba_2.3.5
## [11] DelayedArray_0.22.0 KEGGREST_1.36.0
## [13] RCurl_1.98-1.6 doParallel_1.0.17
## [15] generics_0.1.2 GenomicFeatures_1.48.1
## [17] ScaledMatrix_1.4.0 cowplot_1.1.1
## [19] RSQLite_2.2.14 combinat_0.0-8
## [21] bit_4.0.4 xml2_1.3.3
## [23] lubridate_1.8.0 httpuv_1.6.5
## [25] assertthat_0.2.1 viridis_0.6.2
## [27] amap_0.8-18 xfun_0.31
## [29] jquerylib_0.1.4 hms_1.1.1
## [31] ggdist_3.1.1 evaluate_0.15
## [33] promises_1.2.0.1 DEoptimR_1.0-11
## [35] fansi_1.0.3 restfulr_0.0.13
## [37] progress_1.2.2 dbplyr_2.1.1
## [39] igraph_1.3.1 DBI_1.1.2
## [41] tmvnsim_1.0-2 paletteer_1.4.0
## [43] purrr_0.3.4 ellipsis_0.3.2
## [45] dplyr_1.0.9 ggnewscale_0.4.7
## [47] backports_1.4.1 bookdown_0.26
## [49] biomaRt_2.52.0 sparseMatrixStats_1.8.0
## [51] vctrs_0.4.1 ggalluvial_0.12.3
## [53] Cairo_1.5-15 abind_1.4-5
## [55] withr_2.5.0 cachem_1.0.6
## [57] robustbase_0.95-0 GenomicAlignments_1.32.0
## [59] treeio_1.20.0 prettyunits_1.1.1
## [61] scran_1.24.0 mclust_5.4.9
## [63] mnormt_2.0.2 phytools_1.0-3
## [65] cluster_2.1.3 segmented_1.5-0
## [67] ape_5.6-2 lazyeval_0.2.2
## [69] crayon_1.5.1 labeling_0.4.2
## [71] edgeR_3.38.1 pkgconfig_2.0.3
## [73] vipor_0.4.5 nlme_3.1-157
## [75] nnet_7.3-17 pals_1.7
## [77] rlang_1.0.2 diptest_0.76-0
## [79] miniUI_0.1.1.1 lifecycle_1.0.1
## [81] filelock_1.0.2 dbscan_1.1-10
## [83] BiocFileCache_2.4.0 rsvd_1.0.5
## [85] dichromat_2.0-0.1 distributional_0.3.0
## [87] Matrix_1.5-3 aplot_0.1.4
## [89] phangorn_2.8.1 carData_3.0-5
## [91] boot_1.3-28 beeswarm_0.4.0
## [93] GlobalOptions_0.1.2 viridisLite_0.4.0
## [95] png_0.1-7 rjson_0.2.21
## [97] bitops_1.0-7 Biostrings_2.64.0
## [99] blob_1.2.3 DelayedMatrixStats_1.18.0
## [101] shape_1.4.6 stringr_1.4.0
## [103] rstatix_0.7.0 gridGraphics_0.5-1
## [105] beachmat_2.12.0 scales_1.2.0
## [107] memoise_2.0.1 magrittr_2.0.3
## [109] zlibbioc_1.42.0 compiler_4.2.0
## [111] dqrng_0.3.0 BiocIO_1.6.0
## [113] RColorBrewer_1.1-3 plotrix_3.8-2
## [115] clue_0.3-60 Rsamtools_2.12.0
## [117] snakecase_0.11.0 cli_3.3.0
## [119] XVector_0.36.0 patchwork_1.1.1
## [121] MASS_7.3-57 tidyselect_1.1.2
## [123] stringi_1.7.6 forcats_0.5.1
## [125] highr_0.9 purler_0.1.1
## [127] yaml_2.3.5 BiocSingular_1.12.0
## [129] locfit_1.5-9.5 grid_4.2.0
## [131] sass_0.4.1 fastmatch_1.1-3
## [133] tools_4.2.0 parallel_4.2.0
## [135] circlize_0.4.15 rstudioapi_0.13
## [137] bluster_1.6.0 foreach_1.5.2
## [139] gridExtra_2.3 janitor_2.1.0
## [141] metapod_1.4.0 scatterplot3d_0.3-41
## [143] farver_2.1.0 digest_0.6.29
## [145] FNN_1.1.3 shiny_1.7.1
## [147] quadprog_1.5-8 fpc_2.2-9
## [149] Rcpp_1.0.8.3 car_3.0-13
## [151] broom_0.8.0 scuttle_1.6.2
## [153] later_1.3.0 httr_1.4.3
## [155] AnnotationDbi_1.58.0 ComplexHeatmap_2.12.0
## [157] kernlab_0.9-30 colorspace_2.0-3
## [159] XML_3.99-0.9 reticulate_1.25
## [161] splines_4.2.0 uwot_0.1.11
## [163] yulab.utils_0.0.4 statmod_1.4.36
## [165] rematch2_2.1.2 tidytree_0.3.9
## [167] expm_0.999-6 mapproj_1.2.8
## [169] ggplotify_0.1.0 flexmix_2.3-17
## [171] xtable_1.8-4 jsonlite_1.8.0
## [173] ggtree_3.4.0 modeltools_0.2-23
## [175] ggfun_0.0.6 R6_2.5.1
## [177] pillar_1.7.0 htmltools_0.5.2
## [179] mime_0.12 glue_1.6.2
## [181] fastmap_1.1.0 BiocNeighbors_1.14.0
## [183] class_7.3-20 codetools_0.2-18
## [185] maps_3.4.0 utf8_1.2.2
## [187] bslib_0.3.1 lattice_0.20-45
## [189] tibble_3.1.7 mixtools_1.2.0
## [191] numDeriv_2016.8-1.1 ggbeeswarm_0.6.0
## [193] scquantum_1.0.0 curl_4.3.2
## [195] leiden_0.4.2 gtools_3.9.2
## [197] magick_2.7.3 survival_3.3-1
## [199] limma_3.52.1 rmarkdown_2.14
## [201] munsell_0.5.0 GetoptLong_1.0.5
## [203] fastcluster_1.2.3 GenomeInfoDbData_1.2.8
## [205] iterators_1.0.14 gtable_0.3.0